Preprints of the Biomathematics Group

Kersting, J., Bucheron, C., Spindler, L., Aguirre-Plans, J., Manz, Q., Pock, T., Tan, M., Delgado-chaves, F. M., Nogales, C., Schmidt , H. H. H. W., Menche, J., Maier, A., Baumbach, J., Guney , E., & List, M. (2025). Inferring and Evaluating Network Medicine-Based Disease Modules with Nextflow. bioRxiv. Advance online publication. https://doi.org/10.1101/2025.11.20.687681

Englmaier, L., Walczak, M., Malzl, D., Eggers, C., Eichin, F., Sladky, V. C., Gallob, F. M., Tyshchenko, Y., Zarif, Z., Kolbe, T., Al-Abdi, L., Menche, J., Spassky, N., Geley, S., Rossmanith, W., Alkuraya , F. S., Leidel, S. A., Glatt, S., & Villunger, A. (2025). tRNA thiolation defects disrupt cellular proteostasis and tissue homeostasis in mammals. bioRxiv. Advance online publication. https://doi.org/10.1101/2025.10.24.684405

Lombardo, S. D., Rendeiro, A. F., & Menche, J. (2025). A multilayer network approach elucidates time- and tissue-specific developmental and aging processes. bioRxiv. Advance online publication. https://doi.org/10.1101/2025.05.02.651926

Gorki, A. D., Lakovits, K., Hladik, A., Mesteri, I., Gawish, R., Martins, R., Drobits, B., Menche, J., Knapp, S., & Widder, S. (2025). Linking Transcriptional and Cellular Responses of Human and Murine Pneumococcal Pneumonia. Advance online publication. https://doi.org/10.1101/2025.02.13.638069

Owusu, M., Menche, J., Loizou, J. I., & Weghorn, D. (2025). Dissecting DNA-mismatch-repair-driven mutational processes in human cells. bioRxiv. Advance online publication. https://doi.org/10.1101/2025.02.10.637460

Lambert, A., Schertzer, E., & Wenzel, Y. (2025). Geometry and stability of species complexes: larger species speciate less often. arXiv. https://arxiv.org/abs/2503.22784

Gabriel, F., Ged, F., Veiga, M. H., & Schertzer, E. (2025). Kernel-Smoothed Scores for Denoising Diffusion: A Bias-Variance Study. arXiv. https://arxiv.org/abs/2505.22841

André, M., Foutel-Rodier, F., & Schertzer, E. (2025). Moments of density-dependent branching processes and their genealogy. arXiv. https://arxiv.org/abs/2509.05231

Foutel-Rodier, F., & Schertzer, E. (2025). Non-linear branching processes and Crump-Mode-Jagers processes with interaction. arXiv. https://arxiv.org/abs/2511.10517

Mallein, B., Paparella, F., Schertzer, E., & Talyigás, Z. (2025). Selection of the fittest or selection of the luckiest: the emergence of Goodhart's law in evolution. arXiv. https://arxiv.org/abs/2503.21849

Forien, R., Schertzer, E., Talyigás, Z., & Tourniaire, J. (2025). Stochastic neutral fractions and the effective population size. arXiv. https://arxiv.org/abs/2502.05062

Cordero, F., Mellis, S.-M., & Schertzer, E. (2025). Structured coalescents, coagulation equations and multi-type branching processes. arXiv. https://arxiv.org/abs/2505.09400

Foutel-Rodier, F., Schertzer, E., & Tourniaire, J. (2024). Convergence of spatial branching processes to $α$-stable CSBPs: Genealogy of semi-pushed fronts. arXiv. https://arxiv.org/pdf/2402.05096

Plunder, S., & Merino-Aceituno, S. (2023). Convergence proof for first-order position-based dynamics: An efficient scheme for inequality constrained ODEs. arXiv. https://doi.org/10.48550/arXiv.2310.01215

Degond, P., Frouvelle, A., Merino-Aceituno, S., & Trescases, A. (2022). Hyperbolicity and non-conservativity of a hydrodynamic model of swarming rigid bodies. arXiv. https://doi.org/10.48550/arXiv.2210.16122

Müller, S. (2021). Elementary growth modes/vectors and minimal autocatalytic sets for kinetic/constraint-based models of cellular growth. bioRxiv. https://doi.org/10.1101/2021.02.24.432769

Girardi, E., Fiume, G., Goldmann, U., Sin, C., Müller, F., Lindinger, S., Sedlyarov, V., Srndic, I., Agerer, B., Kartnig, F., Meixner, E., Skucha, A., Rebsamen, M., Bergthaler, A., Menche, J., & Superti-Furga, G. (2020). A systematic genetic interaction map of human solute carriers assigns a role to SLC25A51/MCART1 in mitochondrial NAD uptake. bioRxiv. Advance online publication. https://doi.org/10.1101/2020.08.31.275818